miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|90607246|gb|EB040687.1|EB040687 ACAATGGTGCACCACGTCAGCCAGTCAAATGGGAGAATCCATAAGACCACTGCAGGTATGTAAATGGAAAGTGAGTATCC
GTACACACAGATGATCTCCATGAAGGAGTATGACACCAAGTTCGTGATCTTGTTGTTTCTCCATAGCAGGAAACCCCAGA
GGGCAAGAGGCACCAACCAGGCATAGGTGAAGATCGCTGTTGCAGCAATGGTCACTTTTCGAAACTCAGGGGTGTATTTG
TAGTTTGGTTTGCCTAAGTGCATCAGAAAGTTGGATGTATTTCCACTGATGGCAATGGCAAACACAAGGGTAGTGCAAAT
CCAGAACGGTCCATAAAGATCAGGATTTCTTCGAAGGTGGACCTGAACAAAGTTCTTTCCAGGCCATGGCAGCACTGATC
CGATGATTCTTTCCTTCACATGATGGGTCTCGACATCAAAGAATTTCTGGTAGTACTCAAAAGTCCAGAAAGGGGCACTT
TTCTGTTGCCCAGAGAGAAGCTCTGTCTGGTCGTCATAGGGAAGTGTGTCCTCATCATCACCACCACTGGGATTTAAACC
AGCAGCTCTTTTCTGCTTCTCAGGTTTGACGTCATCATCTTCAATGCTAGTGGTGGTTGCATCTCTGTTGGCTTCTAACA
GATTACCAGCTTCTTCAAATTCCTGGAACTGAAAGGGGTCGTTTGCTGTCGCCATTTACACGGATTCACCCTCAAACTCC
AGAGGCTCGTCTGTCAGGAAAGGTTGGCAACAACTTGATCTTAGAAAACTGTTGATCTTCTAAACTCGTGAAATCATTGC
ACTTCTCTCGGCTC




Most similar to sp|Q6P6G5|YIPF1_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
           PE=2 SV=1
          Length = 306

 Score =  300 bits (769), Expect = 6e-81
 Identities = 145/230 (63%), Positives = 178/230 (77%), Gaps = 2/230 (0%)
 Frame = -3

Query: 686 ANDPFQFQEFEEAGNLLEANRDATTTSIEDDDVKPEKQKRAAGLNPSGGDDEDTLPYDD- 510
           A D  QF+EF +   LL AN DATT +IED  V  + Q R  G +    +DE+ L  +D 
Sbjct: 3   AVDDLQFEEFGDGATLLAANPDATTINIEDPSVSFKHQPRPPG-SLGREEDEELLGTNDS 61

Query: 509 -QTELLSGQQKSAPFWTFEYYQKFFDVETHHVKERIIGSVLPWPGKNFVQVHLRRNPDLY 333
            +TELL+GQ+KS+PFWTFEYYQ FFDV+T+ V +RI GS+LP PGKNFV++++R NPDLY
Sbjct: 62  DETELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPVPGKNFVRLYIRSNPDLY 121

Query: 332 GPFWICTTLVFAIAISGNTSNFLMHLGKPNYKYTPEFRKVTIAATAIFTYAWLVPLALWG 153
           GPFWIC TLVFAIAISGN SNFL+HLG+  Y Y PEF+KV+IAAT I+ YAWLVPLALWG
Sbjct: 122 GPFWICATLVFAIAISGNLSNFLIHLGEKTYHYVPEFQKVSIAATVIYAYAWLVPLALWG 181

Query: 152 FLLWRNNKITNLVSYSFMEIICVYGYSLSIYIPAVVLWILPFDWLTWCTI 3
           FLLWRN+K+ N+VSYSF+EI+CVYGYSL IYIP  VLWI+P   + W  +
Sbjct: 182 FLLWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAVLWIIPQRVIRWVLV 231